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袁晓辉

发布时间:2016-02-22     字体:[增加 减小]


    名: 袁晓辉

    别:

出生年月:1977 11

    位:博士

    称:教授/博士生导师

E-mailyuanxiaohuiA.T.whuteducn

实验室主页: http://www.wutbiolab.cn/

 

教育经历

1995.09-1999.07:    武汉理工大学       汽车设计        学士

1999.09-2002.04:    武汉理工大学       计算机应用      硕士

2004.04-2007.03:     北海道大学         应用数学       博士

 

工作经历

2002.05-2003.09:    中兴通讯南研所    网络事业部       工程师

2007.04-2010.03:    北海道大学        电子科学研究所   博士后

2010.04- 2017.06: 中国科学院东北地理与农业生态研究所     研究员

2017.06-  至今: 武汉理工大学计算机科学与技术学院        

 

学术任职及荣誉

 中科院“百人计划”

《植物学报》编委

 

主持科研项目(项目负责人)

1.   国家重点研发计划主要经济作物分子设计育种子课题:分子设计育种信息平台,起至年月:2016-2020

2.   中国科学院战略性先导科技专项(A类)“分子模块育种”子课题:“高通量表型组和代谢组学分析” 起至年月:2013-2018

3.   中科院引进国外杰出人才“百人计划”项目 起至年月:2014-2016

4.  企业委托 “兰花基因组测序” 起至年月:2015-2018

5.   教育部留学回国科研启动基金:“气体放电反应扩散方程的动力学解析” 起至年月:2012-2013

6.   国家自然科学基金青年基金:“动物体节生长反应扩散模型的全局分歧解析” 起至年月:2011-2013

7.   教育部“春晖计划”短期回国服务项目  起至年月:2008

参与科研项目:

1.   国家自然科学基金委重点基金:“大豆光周期调控开花的分子机制”(2015-2019

2.           黑龙江省自然科学基金重点基金:“大豆生育期数量性状位点克隆与鉴定” (2011-2014)

 

研究方向:

1.      生物信息学,作物基因组学,多组学整合分析,生物大数据挖掘

2.      生物文献挖掘,机器学习

3.      作物表型组学,系统生物学

 

代表性论著

基因组学:

1.         Fang C, Ma Y, Wu S, et al. Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean. Genome Biology. (2017); 18:161. doi:10.1186/s13059-017-1289-9.

2.         Gao, J., Yang, S., Cheng, W., Fu, Y., Leng, J., Yuan, X., ... & Feng, X. (2017). GmILPA1, Encoding an anaphase-promoting complex-like Protein, affects Leaf Petiole Angle. Plant Physiology, pp-00074.

3.         Lu, S., Zhao, X., Hu, Y., Liu, S., Nan, H., Li, X., ... & Su, T. (2017). Natural variation at the soybean J locus improves adaptation to the tropics and enhances yield. Nature Genetics.

4.         Li, Z., Hu, G., Liu, X., Zhou, Y., Li, Y., Zhang, X., ... & Zhang, Z. (2016). Transcriptome Sequencing Identified Genes and Gene Ontologies Associated with Early Freezing Tolerance in Maize. Frontiers in Plant Science,

5.         Xiaohui Zhao, Dong Cao, Zhijun Huang, Jialin Wang, Sijia Lu, Yan Xu, Baohui Liu, Fanjiang Kong, Xiaohui Yuan, (2015), Dual functions of GmTOE4a in the regulation of photoperiodmediated flowering and plant morphology in soybean, Plant Molecular Biology

 

文献挖掘与机器学习:

1.         Wenhui Xing, Xiaohui Yuan, Lin Li , Xiaoyu Zhang,Yuhua Fu, Shengwu Xiong , Lun Hu1and Jing Peng, 2018A Gene-Phenotype Relationship Extraction Pipeline from the Biomedical Literature Using a Representation Learning ApproachISMB 2018

2.         Wenhui Xing, Xiaohui Yuan, Lin Li, and Jing Peng, 2017Cascade Word Embedding to Sentence Embedding: A Class Label Enhanced Approach to Phenotype ExtractionBIBM 2017

3.         Hu, L., Yuan, X., Hu, P., & Chan, K. C. (2017). Efficiently predicting large-scale protein-protein interactions using MapReduce. Computational Biology and Chemistry.

4.         Yang, J., Shi, X., Hu, L., Luo, D., Peng, J., Xiong, S., ... & Yuan, X. (2016). InDel marker detection by integration of multiple softwares using machine learning techniques. BMC Bioinformatics, 1-11.

5.         Shi X, Peng J, Yu X, Zhang X, Li D, Liu B, Kong F, Yuan X. PopGeV: A Web-based Large-scale Population Genome Browser. Bioinformatics. 2015 May 21. pii: btv324.

6.         Jing Peng, Xinyi Shi, Yiming Sun, Dongye Li, Baohui Liu, Fanjiang Kong, Xiaohui Yuan, QTLMiner: QTL database curation by mining tables in literature, Bioinformatics 01/2015; 31(10).

 

表型组学与系统生物学:

1.         Yu, X., Xiong, S., Gao, Y., Zhao, Y., & Yuan, X. (2016, November). Multiscale Crossing Representation Using Combined Feature of Contour and Venation for Leaf Image Identification. In Digital Image Computing: Techniques and Applications (DICTA), IEEE.

2.         Teramoto T, Yuan XH, Bar M, Nishiura Y. Onset of unidirectional pulse propagation in an excitable medium with asymmetric heterogeneity. Phys Rev E, 79:046205, 2009.

3.         Yuan XH, Teramoto T, Nishiura Y. Heterogeneity-induced defect bifurcation and pulse dynamics for a three-component reaction-diffusion system, Phys Rev E, 75:036220, 2007.

4.         Nishiura Y, Teramoto T, Yuan XH, Ueda K-I: Dynamics of traveling pulse in heterogeneous Media. Chaos, 17: 037104, 2007.